Surely the initial aim is to avoid producing any more affected animals, producing carrier pups isn't a problem if they are homed/bred from wisely. (I'm sorry I'm using the BC terminology of 'normal', 'carrier' and 'affected' but I'm sure you know what I mean)
I certainly have no qualms breeding form carrier animals, I have 2 CEA carrier bitches and 1 carrier dog amongst my BC's (the carrier rate is about 20%) and all 3 have been bred to DNA 'normal' partners; since all my pups are endorsed anyway it is just another condition of the endorsment. From one litter I selected 2 dog and 2 bitch pups I was interested in using in future and DNA tested them , both bitches were clear, I kept one and the other went to my friend out in Austria as her foundation bitch, 1 dog was clear I kept him in co-ownership and the other dog was a carrier so he went to an obedience home where he has been castrated. In my second litter I selected a bitch puppy I wanted to keep and DNA tested her, she is clear and in the third I selected 2 bitch puppies to test both of which were clear, one went back to the stud dog owner and the other went to a friend, a third bitch from that litter has tested as a carrier, her owners will breed her to a clear dog....no problem! I do feel pretty lucky though, over 3 litters I have selected 7 pups for testing and only had 1 carrier amongst them, each stood a 50% chance of being 'normal'. Ultimatley I hope to breed the gene out but it may take a number of generations to do that without losing the other qualities I value, still, Rome wasn't built in a day ;-)
I'll have it all to go through again when I get the cockers tested I guess